DNA/mRNA Site Search

Map position is specified in base pairs from the start of the replicon.

Enter a transcription factor, sigma factor or regulatory protein or RNA name. Use the autocomplete functionality to select a full name, as no substring matching is done on the regulator name. If no match is found, then the database contains no regulatory interactions or sites involving that regulator. This filter is compatible only with searches for transcription units, promoters, transcription factor binding sites, attenuators, or mRNA binding sites.
Examples: "CRP", "MicF"

Enter a compound name. Use the autocomplete functionality to select a full compound name, as no substring matching is done on the compound name. If no match is found, then the database contains no regulatory interactions or sites involving that compound. This filter is compatible only with searches for transcription units, promoters, transcription factor binding sites, attenuators, riboswitches or mRNA binding sites.
Examples: "spermidine", "thiamine diphosphate", "L-tryptophan"

Select one or more evidence codes to filter the result to only include sites that have the corresponding evidence for their existence, location or function. Deselecting all evidence codes has the same effect as selecting all evidence codes -- no filtering will be done based on evidence code.