#
# Columns to use: 1-6,  Absolute values
# Color scheme: Blue-Gray-Orange with cutoff=5000
#
# This transcriptomics dataset was obtained from von Wulffen et al Genes 8:3 2017
# "Rapid Sampling of Escherichia coli After Changing Oxygen Conditions Reveals Transcriptional Dynamics"
# This file was created by averaging the replicates in GSE71562, then normalizing
# using the TPM (Transcripts per Kilobase Million) approach.  Genes that had zero counts in
# more than 15% of the samples were removed from further analysis.
#
# T0: Samples taken under anaerobic conditions, then aeration with O2 begins.
# T0.5: Samples taken at 0.5 minutes after aeration begins
# T1: Samples taken at 1 minute after aeration begins
# T2: Samples taken at 2 minutes after aeration begins
# T5: Samples taken at 5 minutes after aeration begins
# T10: Samples taken at 10 minutes after aeration begins
#

$Table=multi-omics-file1-example.txt
$Column=1-5
$Type=Gene
$Target=Edge-Color
$Counts=Absolute
$NumColumns=1
$DatasetLabel=Gene Layer

$Table=multi-omics-file2-example.txt
$Column=1-5
$Type=Compound
$Target=Node-Color
$Counts=Absolute
$NumColumns=1
$DatasetLabel=Comp Layer